Index

_

__init__() (experiment.experiments.Experiment method) (experiment.hooks.hook_skeleton.CompositeHook method) (experiment.hooks.ldst_filterstats_hook.LDSTFilterStatsHook method) (experiment.hooks.plot_hooks.plotHook method) (experiment.hooks.plot_hooks.plotIterGTAMHook method) (experiment.hooks.plot_hooks.plotIterHook method) (experiment.hooks.time_hook.timeHook method) (experiment.specification.exp_chapelle.ExpChapelle method) (gssl.classifiers.CLGC.CLGCClassifier method) (gssl.classifiers.GFHF.GFHF method) (gssl.classifiers.GTAM.GTAMClassifier method) (gssl.classifiers.LapEigLS.LapEigLS method) (gssl.classifiers.LGC.LGCClassifier method) (gssl.classifiers.nn.NN.Accumulator method) (gssl.classifiers.nn.NN.NNClassifier method) (gssl.classifiers.RF.RFClassifier method) (gssl.classifiers.SIIS.SIISClassifier method) (gssl.filters.LDST.LDST method) (gssl.filters.ldstRemoval.LDSTRemover method) (gssl.filters.LGC_LVO.LGC_LVO_Filter method) (gssl.filters.MRremoval.MRRemover method) (gssl.graph.gssl_affmat.AffMatGenerator method) (input.noise.noise_process.LabelNoiseProcess method) (output.plot_core.vertexplotOpt method)

A

Accumulator (class in gssl.classifiers.nn.NN) accuracy() (in module gssl.graph.gssl_utils) accuracy_unlabeled() (in module gssl.graph.gssl_utils) add_key_prefix() (in module experiment.specification.specification_bits) AFFMAT_CIFAR10_LOAD (in module experiment.specification.specification_bits) affmatConfig() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method) AffMatGenerator (class in gssl.graph.gssl_affmat) AFTER_AFFMAT (experiment.selector.HookTimes attribute) AFTER_CLASSIFIER (experiment.selector.HookTimes attribute) AFTER_FILTER (experiment.selector.HookTimes attribute) AFTER_NOISE (experiment.selector.HookTimes attribute) aggregate_csv() (experiment.specification.specification_skeleton.EmptySpecification method) (in module output.aggregate_csv)

ALG_ITER (experiment.selector.Hook attribute) ALG_RESULT (experiment.selector.Hook attribute) algConfig() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method) ALGORITHM_NONE (in module experiment.specification.specification_bits) allPermutations() (in module experiment.specification.specification_bits) ALPHA (gssl.classifiers.nn.NN.NNClassifier attribute) alpha() (gssl.classifiers.CLGC.CLGCClassifier property) (gssl.classifiers.LGC.LGCClassifier property) apply_noise() (in module input.noise.noise_utils) authenticate_plotly() (in module output.plot_core) autohooks() (gssl.classifiers.classifier.GSSLClassifier class method) (gssl.filters.filter.GSSLFilter class method)

B

BEFORE_AFFMAT (experiment.selector.HookTimes attribute) BEFORE_CLASSIFIER (experiment.selector.HookTimes attribute) BEFORE_FILTER (experiment.selector.HookTimes attribute)

BEFORE_NOISE (experiment.selector.HookTimes attribute) best_f1 (experiment.hooks.ldst_filterstats_hook.LDSTFilterStatsHook attribute) build_graph() (gssl.classifiers.nn.NN.NNClassifier method)

C

calc_Z() (in module gssl.graph.gssl_utils) calculate_statistics() (in module output.aggregate_csv) class_mass_normalization() (in module gssl.graph.gssl_utils) CLASSIFIER (log.logger.LogLocation attribute) CLGCClassifier (class in gssl.classifiers.CLGC) color_scale_continuous() (in module output.plot_core) color_scale_discrete() (in module output.plot_core) comb() (in module experiment.specification.specification_bits)

CompositeHook (class in experiment.hooks.hook_skeleton) conv_large() (in module gssl.classifiers.nn.models) conv_small() (in module gssl.classifiers.nn.models) convert_sparse_matrix_to_sparse_tensor() (in module gssl.classifiers.LGC_tf) (in module gssl.classifiers.nn.NN) corrupt() (input.noise.noise_process.LabelNoiseProcess method) cos_decay() (in module gssl.classifiers.nn.NN) createVideo() (experiment.hooks.plot_hooks.plotIterHook method) CSV_FOLDER (in module output.folders)

D

debug() (in module gssl.classifiers.nn.NN) (in module log.logger) (in module output.aggregate_csv) DEBUG_MODE (experiment.specification.specification_skeleton.EmptySpecification attribute) DEFAULT_CONSTANT_COLOR (output.plot_core.vertexplotOpt attribute) DEFAULT_UNLABELED_COLOR (output.plot_core.vertexplotOpt attribute)

deg_matrix() (in module gssl.graph.gssl_utils) ds (experiment.specification.exp_chapelle.ExpChapelle attribute) DURING_AFFMAT (experiment.selector.HookTimes attribute) DURING_CLASSIFIER (experiment.selector.HookTimes attribute) DURING_FILTER (experiment.selector.HookTimes attribute) DURING_NOISE (experiment.selector.HookTimes attribute)

E

edge_mat() (gssl.classifiers.SIIS.SIISClassifier static method) EmptySpecification (class in experiment.specification.specification_skeleton) ent() (in module gssl.classifiers.nn.NN) epsilonMask() (in module gssl.graph.gssl_affmat) error() (in module log.logger) eval_get_data (gssl.classifiers.nn.NN.NNClassifier attribute) evaluate_simfunc() (gssl.classifiers.nn.NN.NNClassifier method) ExpChapelle (class in experiment.specification.exp_chapelle) ExpChapelle_2 (class in experiment.specification.exp_chapelle) ExpChapelle_3 (class in experiment.specification.exp_chapelle) ExpChapelle_4 (class in experiment.specification.exp_chapelle) ExpChapelle_5 (class in experiment.specification.exp_chapelle) ExpCIFAR (class in experiment.specification.exp_cifar) ExpDebug (class in experiment.specification.exp_debug) experiment module Experiment (class in experiment.experiments) EXPERIMENT (log.logger.LogLocation attribute) experiment.experiments module experiment.hooks module experiment.hooks.hook_skeleton module

experiment.hooks.ldst_filterstats_hook module experiment.hooks.plot_hooks module experiment.hooks.time_hook module experiment.prefixes module experiment.selector module experiment.specification module experiment.specification.exp_chapelle module experiment.specification.exp_cifar module experiment.specification.exp_debug module experiment.specification.exp_filter_LDST module experiment.specification.specification_bits module experiment.specification.specification_skeleton module extract_lap_eigvec() (in module gssl.graph.gssl_utils)

F

FILTER (log.logger.LogLocation attribute) FILTER_AFTER (experiment.selector.Hook attribute) FILTER_ITER (experiment.selector.Hook attribute) FILTER_MR (in module experiment.specification.specification_bits) FILTER_NOFILTER (in module experiment.specification.specification_bits) filterConfig() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method)

FilterLDST (class in experiment.specification.exp_filter_LDST) fit() (gssl.classifiers.classifier.GSSLClassifier method) (gssl.classifiers.CLGC.CLGCClassifier method) (gssl.classifiers.GFHF.GFHF method) (gssl.classifiers.GTAM.GTAMClassifier method) (gssl.classifiers.LapEigLS.LapEigLS method) (gssl.classifiers.LGC.LGCClassifier method) (gssl.classifiers.nn.NN.NNClassifier method) (gssl.classifiers.RF.RFClassifier method) (gssl.classifiers.SIIS.SIISClassifier method) (gssl.filters.filter.GSSLFilter method) (gssl.filters.LDST.LDST method) (gssl.filters.ldstRemoval.LDSTRemover method) (gssl.filters.LGC_LVO.LGC_LVO_Filter method) (gssl.filters.MRremoval.MRRemover method) FORCE_GTAM_LDST_SAME_MU (experiment.specification.specification_skeleton.EmptySpecification attribute)

G

gather() (in module gssl.classifiers.LGC_tf) (in module gssl.classifiers.nn.NN) generalConfig() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method) generateAffMat() (gssl.graph.gssl_affmat.AffMatGenerator method) get_all_configs() (experiment.specification.specification_skeleton.EmptySpecification method) get_cifar10() (in module input.dataset.cifar10) get_confmat_acc() (in module gssl.filters.filter_utils) get_confmat_dict() (in module gssl.filters.filter_utils) get_confmat_f1_score() (in module gssl.filters.filter_utils) get_confmat_FN() (in module gssl.filters.filter_utils) get_confmat_FP() (in module gssl.filters.filter_utils) get_confmat_npv() (in module gssl.filters.filter_utils) get_confmat_precision() (in module gssl.filters.filter_utils) get_confmat_recall() (in module gssl.filters.filter_utils) get_confmat_specificity() (in module gssl.filters.filter_utils) get_confmat_TN() (in module gssl.filters.filter_utils) get_confmat_TP() (in module gssl.filters.filter_utils) get_Isomap() (in module gssl.graph.gssl_utils) get_mnist() (in module input.dataset.mnist) get_or_calc_Mask() (gssl.graph.gssl_affmat.AffMatGenerator method) get_P() (in module gssl.classifiers.LGC_tf) get_PCA() (in module gssl.graph.gssl_utils) get_pred() (in module gssl.graph.gssl_utils) get_S() (in module gssl.classifiers.nn.NN) get_S_fromtensor() (in module gssl.classifiers.LGC_tf) (in module gssl.classifiers.nn.NN) get_spec_name() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method) get_Standardized() (in module gssl.graph.gssl_utils) get_step_rate() (experiment.hooks.hook_skeleton.GSSLHook method) get_top_dir() (in module output.folders) get_unlabeling_confmat() (in module gssl.filters.filter_utils) getDataframe() (in module input.dataset.toy_ds) getTFDataset() (in module input.dataset.toy_ds) GFHF (class in gssl.classifiers.GFHF)

gssl module gssl.classifiers module gssl.classifiers.classifier module gssl.classifiers.CLGC module gssl.classifiers.GFHF module gssl.classifiers.GTAM module gssl.classifiers.LapEigLS module gssl.classifiers.LGC module gssl.classifiers.LGC_tf module gssl.classifiers.nn module gssl.classifiers.nn.models module gssl.classifiers.nn.NN module gssl.classifiers.RF module gssl.classifiers.SIIS module gssl.filters module gssl.filters.filter module gssl.filters.filter_utils module gssl.filters.LDST module gssl.filters.ldstRemoval module gssl.filters.LGC_LVO module gssl.filters.MRremoval module gssl.graph module gssl.graph.gssl_affmat module gssl.graph.gssl_utils module GSSLClassifier (class in gssl.classifiers.classifier) GSSLFilter (class in gssl.filters.filter) GSSLHook (class in experiment.hooks.hook_skeleton) GTAM_F (experiment.selector.Hook attribute) GTAM_Q (experiment.selector.Hook attribute) GTAM_Y (experiment.selector.Hook attribute) GTAMClassifier (class in gssl.classifiers.GTAM)

H

handle_adaptive_sigma() (gssl.graph.gssl_affmat.AffMatGenerator method) Hook (class in experiment.selector)

HOOK (log.logger.LogLocation attribute) HookTimes (class in experiment.selector)

I

info() (in module log.logger) (in module output.aggregate_csv) INIT_ALL (experiment.selector.Hook attribute) INIT_LABELED (experiment.selector.Hook attribute) init_matrix() (in module gssl.graph.gssl_utils) init_matrix_argmax() (in module gssl.graph.gssl_utils) input module input.dataset module input.dataset.cifar10 module input.dataset.mnist module input.dataset.toy_ds module input.noise module

input.noise.noise_process module input.noise.noise_utils module inputConfig() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method) ISOLET (class in experiment.specification.exp_filter_LDST)

K

keys_multiplex() (in module experiment.experiments)

kl_divergence() (in module gssl.classifiers.nn.NN) knnMask() (in module gssl.graph.gssl_affmat)

L

labeled_gen() (gssl.classifiers.nn.NN.NNClassifier method) LabelNoiseProcess (class in input.noise.noise_process) labels_indicator() (in module gssl.graph.gssl_utils) LAMBDA (gssl.classifiers.nn.NN.NNClassifier attribute) lap_matrix() (in module gssl.graph.gssl_utils) LapEigLS (class in gssl.classifiers.LapEigLS) LDST (class in gssl.filters.LDST) LDST() (gssl.filters.LDST.LDST method) (gssl.filters.ldstRemoval.LDSTRemover method) LDST_STATS_HOOK (experiment.selector.Hook attribute) LDSTFilterStatsHook (class in experiment.hooks.ldst_filterstats_hook) LDSTRemover (class in gssl.filters.ldstRemoval) LGC_iter_TF() (in module gssl.classifiers.LGC_tf) LGC_LVO_Filter (class in gssl.filters.LGC_LVO)

LGCClassifier (class in gssl.classifiers.LGC) LGCLVO() (gssl.filters.LGC_LVO.LGC_LVO_Filter method) linear() (in module gssl.classifiers.nn.models) ll (in module log.logger) LNP() (in module gssl.graph.gssl_affmat) load_cifar10_batch() (in module input.dataset.cifar10) load_cifar10_labelnames() (in module input.dataset.cifar10) load_cifar10_test() (in module input.dataset.cifar10) load_sparse_csr() (in module settings) log module log() (in module log.logger) log.logger module LogLocation (class in log.logger)

M

main() (in module experiment.experiments) MATRIX (log.logger.LogLocation attribute) MNIST (class in experiment.specification.exp_filter_LDST) module experiment experiment.experiments experiment.hooks experiment.hooks.hook_skeleton experiment.hooks.ldst_filterstats_hook experiment.hooks.plot_hooks experiment.hooks.time_hook experiment.prefixes experiment.selector experiment.specification experiment.specification.exp_chapelle experiment.specification.exp_cifar experiment.specification.exp_debug experiment.specification.exp_filter_LDST experiment.specification.specification_bits experiment.specification.specification_skeleton gssl gssl.classifiers gssl.classifiers.classifier gssl.classifiers.CLGC gssl.classifiers.GFHF gssl.classifiers.GTAM gssl.classifiers.LapEigLS gssl.classifiers.LGC gssl.classifiers.LGC_tf gssl.classifiers.nn gssl.classifiers.nn.models gssl.classifiers.nn.NN gssl.classifiers.RF gssl.classifiers.SIIS gssl.filters gssl.filters.filter gssl.filters.filter_utils gssl.filters.LDST gssl.filters.ldstRemoval gssl.filters.LGC_LVO gssl.filters.MRremoval gssl.graph gssl.graph.gssl_affmat gssl.graph.gssl_utils input input.dataset input.dataset.cifar10 input.dataset.mnist input.dataset.toy_ds input.noise input.noise.noise_process input.noise.noise_utils log log.logger output output.aggregate_csv output.folders output.plot_core output.plots settings

MRRemover (class in gssl.filters.MRremoval)

N

NLNP() (in module gssl.graph.gssl_affmat) NNClassifier (class in gssl.classifiers.nn.NN) NOISE (log.logger.LogLocation attribute) NOISE_AFTER (experiment.selector.Hook attribute) NOISE_UNIFORM_DET_MODERATE (in module experiment.specification.specification_bits) noiseConfig() (experiment.specification.exp_chapelle.ExpChapelle method) (experiment.specification.exp_chapelle.ExpChapelle_2 method) (experiment.specification.exp_chapelle.ExpChapelle_3 method) (experiment.specification.exp_chapelle.ExpChapelle_4 method) (experiment.specification.exp_chapelle.ExpChapelle_5 method) (experiment.specification.exp_cifar.ExpCIFAR method) (experiment.specification.exp_debug.ExpDebug method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.exp_filter_LDST.ISOLET method) (experiment.specification.exp_filter_LDST.MNIST method) (experiment.specification.specification_skeleton.EmptySpecification method)

O

OTHER (log.logger.LogLocation attribute) output module OUTPUT (log.logger.LogLocation attribute) output.aggregate_csv module

output.folders module output.plot_core module output.plots module OVERWRITE (experiment.specification.specification_skeleton.EmptySpecification attribute)

P

p_bar() (in module settings) plot() (experiment.hooks.plot_hooks.plotHook method) plot_all_indexes() (in module output.plots) PLOT_FOLDER (in module output.folders) plot_labeled_indexes() (in module output.plots) plotGraph() (in module output.plot_core)

plotHook (class in experiment.hooks.plot_hooks) plotIterGTAMHook (class in experiment.hooks.plot_hooks) plotIterHook (class in experiment.hooks.plot_hooks) postprocess() (in module experiment.experiments) pred_gen() (gssl.classifiers.nn.NN.NNClassifier method) processify() (in module experiment.specification.specification_skeleton)

R

random_gen() (gssl.classifiers.nn.NN.NNClassifier method) RECALC_W (gssl.classifiers.nn.NN.NNClassifier attribute) repeat() (in module gssl.classifiers.LGC_tf) (in module gssl.classifiers.nn.NN) RESULTS_FOLDER (in module output.folders) RFClassifier (class in gssl.classifiers.RF) rmFolders() (experiment.hooks.plot_hooks.plotIterHook method) ROOT_FOLDER (in module settings)

row_normalize() (in module gssl.classifiers.LGC_tf) (in module gssl.classifiers.nn.NN) run() (experiment.experiments.Experiment method) (experiment.specification.exp_filter_LDST.FilterLDST method) (experiment.specification.specification_skeleton.EmptySpecification method) run_all() (experiment.specification.specification_skeleton.EmptySpecification method) run_debug_example_all() (in module experiment.experiments) run_debug_example_one() (in module experiment.experiments) runprocessify_func() (in module experiment.specification.specification_skeleton)

S

save_sparse_csr() (in module settings) scipy_to_np() (in module gssl.graph.gssl_utils) select_affmat() (in module experiment.selector) select_and_add_hook() (in module experiment.selector) select_classifier() (in module experiment.selector) select_filter() (in module experiment.selector) select_input() (in module experiment.selector) select_noise() (in module experiment.selector)

set_allowed_debug_locations() (in module log.logger) settings module SIGMA (gssl.classifiers.nn.NN.NNClassifier attribute) SIISClassifier (class in gssl.classifiers.SIIS) simple() (in module gssl.classifiers.nn.models) sort_coo() (in module gssl.graph.gssl_affmat) SPECIFICATION (log.logger.LogLocation attribute) split_indices() (in module gssl.graph.gssl_utils)

T

T_AFFMAT (experiment.selector.Hook attribute) T_ALG (experiment.selector.Hook attribute) T_FILTER (experiment.selector.Hook attribute)

T_NOISE (experiment.selector.Hook attribute) timeHook (class in experiment.hooks.time_hook) transition_count_mat() (in module input.noise.noise_utils) TUNING_ITER_AS_NOISE_PCT (experiment.specification.specification_skeleton.EmptySpecification attribute)

U

uniform_noise_transition_prob_mat() (in module input.noise.noise_utils) unlabeled_gen() (gssl.classifiers.nn.NN.NNClassifier method) unlabeled_pairs_gen() (gssl.classifiers.nn.NN.NNClassifier method)

update_F() (in module gssl.classifiers.LGC_tf) USE_UNLABELED (gssl.classifiers.nn.NN.NNClassifier attribute) UTILS (log.logger.LogLocation attribute)

V

vertexplotOpt (class in output.plot_core)

W

W (experiment.experiments.Experiment attribute) W_FILTER_AFTER (experiment.selector.Hook attribute) W_from_K() (gssl.graph.gssl_affmat.AffMatGenerator method) W_INIT_ALL (experiment.selector.Hook attribute) W_INIT_LABELED (experiment.selector.Hook attribute)

W_NOISE_AFTER (experiment.selector.Hook attribute) warn() (in module log.logger) WRITE_FREQ (experiment.specification.exp_filter_LDST.FilterLDST attribute) (experiment.specification.exp_filter_LDST.ISOLET attribute) (experiment.specification.exp_filter_LDST.MNIST attribute) (experiment.specification.specification_skeleton.EmptySpecification attribute)

X

X (experiment.experiments.Experiment attribute)

xent() (in module gssl.classifiers.nn.NN)

Y

Y (experiment.experiments.Experiment attribute)

Z

ZCA() (in module input.dataset.cifar10)